The administrative body of Ephesus Jr. Academy is a School Board, which is elected by the church. The School Board meets on the 4th Tuesday of every month at 6:30 PM during the school year. The members of the School Board are chosen for their consecration, their belief in and loyalty to the principles of Christian education, their good judgment and tact, their experience in school matters, and their financial judgment and ability. They believe in and have a willingness to follow denominational education policies and recommendations.
The Pastor of the church is a member of the School Board. The principal of the Academy is also a member of the Board. Some members of the Board are parents of children who attend or have attended the Academy, so that the Board may profit from parental viewpoints and counsel, which result from close-up observation and experiences. The officers consist of a chairperson, vice-chairperson, secretary, treasurer and recording secretary. The principal of the school is generally appointed as secretary of the Board. The Executive Board consists of the Pastor, Chairperson, Principal and Treasurer.